PhytophthoraV1, Main, Exploration, bibRecord, 000826

Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications.

Identifieur interne : 000826 ( Main/Exploration ); précédent : 000825; suivant : 000827

Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications.

Auteurs : Muhammad Ali [République populaire de Chine] ; De-Xu Luo [République populaire de Chine] ; Abid Khan [République populaire de Chine] ; Saeed Ul Haq [République populaire de Chine] ; Wen-Xian Gai [République populaire de Chine] ; Huai-Xia Zhang [République populaire de Chine] ; Guo-Xin Cheng [République populaire de Chine] ; Izhar Muhammad [République populaire de Chine] ; Zhen-Hui Gong [République populaire de Chine]

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2018.

RBID : pubmed:30060631

Descripteurs français

KwdFr :
- Capsicum (génétique), Capsicum (physiologie), Chitine (métabolisme), Feuilles de plante (MeSH), Gene Ontology (MeSH), Génome végétal (MeSH), Interactions hôte-parasite (MeSH), Liaison aux protéines (MeSH), Maladies des plantes (génétique), Maladies des plantes (parasitologie), Phylogenèse (MeSH), Phytophthora (physiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Résistance à la maladie (MeSH), Stress physiologique (MeSH).
MESH :
- génétique : Capsicum, Maladies des plantes, Protéines végétales.
- métabolisme : Chitine, Protéines végétales.
- parasitologie : Maladies des plantes.
- physiologie : Capsicum, Phytophthora.
- Feuilles de plante, Gene Ontology, Génome végétal, Interactions hôte-parasite, Liaison aux protéines, Phylogenèse, Régulation de l'expression des gènes végétaux, Résistance à la maladie, Stress physiologique.

English descriptors

KwdEn :
- Capsicum (genetics), Capsicum (physiology), Chitin (metabolism), Disease Resistance (MeSH), Gene Expression Regulation, Plant (MeSH), Gene Ontology (MeSH), Genome, Plant (MeSH), Host-Parasite Interactions (MeSH), Phylogeny (MeSH), Phytophthora (physiology), Plant Diseases (genetics), Plant Diseases (parasitology), Plant Leaves (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Protein Binding (MeSH), Stress, Physiological (MeSH).
MESH :
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Chitin, Plant Proteins.
- genetics : Capsicum, Plant Diseases.
- parasitology : Plant Diseases.
- physiology : Capsicum, Phytophthora.
- Disease Resistance, Gene Expression Regulation, Plant, Gene Ontology, Genome, Plant, Host-Parasite Interactions, Phylogeny, Plant Leaves, Protein Binding, Stress, Physiological.

Abstract

Chitin-binding proteins are pathogenesis-related gene family, which play a key role in the defense response of plants. However, thus far, little is known about the chitin-binding family genes in pepper (Capsicum annuum L.). In current study, 16 putative chitin genes (CaChi) were retrieved from the latest pepper genome database, and were classified into four distinct classes (I, III, IV and VI) based on their sequence structure and domain architectures. Furthermore, the structure of gene, genome location, gene duplication and phylogenetic relationship were examined to clarify a comprehensive background of the CaChi genes in pepper. The tissue-specific expression analysis of the CaChi showed the highest transcript levels in seed followed by stem, flower, leaf and root, whereas the lowest transcript levels were noted in red-fruit. Phytophthora capsici post inoculation, most of the CaChi (CaChiI3, CaChiIII1, CaChiIII2, CaChiIII4, CaChiIII6, CaChiIII7, CaChiIV1, CaChiVI1 and CaChiVI2) were induced by both strains (PC and HX-9). Under abiotic and exogenous hormonal treatments, the CaChiIII2, CaChiIII7, CaChiVI1 and CaChiVI2 were upregulated by abiotic stress, while CaChiI1, CaChiIII7, CaChiIV1 and CaChiIV2 responded to hormonal treatments. Furthermore, CaChiIV1-silenced plants display weakened defense by reducing (60%) root activity and increase susceptibility to NaCl stress. Gene ontology (GO) enrichment analysis revealed that CaChi genes primarily contribute in response to biotic, abiotic stresses and metabolic/catabolic process within the biological process category. These results exposed that CaChi genes are involved in defense response and signal transduction, suggesting their vital roles in growth regulation as well as response to stresses in pepper plant. In conclusion, these finding provide basic insights for functional validation of the CaChi genes in different biotic and abiotic stresses.

DOI: 10.3390/ijms19082216
PubMed: 30060631
PubMed Central: PMC6121964

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000705
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Le document en format XML

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<term>Disease Resistance (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Gene Ontology (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Host-Parasite Interactions (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Phytophthora (physiology)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (parasitology)</term>
<term>Plant Leaves (MeSH)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Protein Binding (MeSH)</term>
<term>Stress, Physiological (MeSH)</term>
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<term>Capsicum (physiologie)</term>
<term>Chitine (métabolisme)</term>
<term>Feuilles de plante (MeSH)</term>
<term>Gene Ontology (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Interactions hôte-parasite (MeSH)</term>
<term>Liaison aux protéines (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (parasitologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Phytophthora (physiologie)</term>
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<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
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<front><div type="abstract" xml:lang="en">Chitin-binding proteins are pathogenesis-related gene family, which play a key role in the defense response of plants. However, thus far, little is known about the chitin-binding family genes in pepper (<i>Capsicum annuum</i>
 L.). In current study, 16 putative chitin genes (CaChi) were retrieved from the latest pepper genome database, and were classified into four distinct classes (I, III, IV and VI) based on their sequence structure and domain architectures. Furthermore, the structure of gene, genome location, gene duplication and phylogenetic relationship were examined to clarify a comprehensive background of the CaChi genes in pepper. The tissue-specific expression analysis of the CaChi showed the highest transcript levels in seed followed by stem, flower, leaf and root, whereas the lowest transcript levels were noted in red-fruit. Phytophthora capsici post inoculation, most of the CaChi (CaChiI3, CaChiIII1, CaChiIII2, CaChiIII4, CaChiIII6, CaChiIII7, CaChiIV1, CaChiVI1 and CaChiVI2) were induced by both strains (PC and HX-9). Under abiotic and exogenous hormonal treatments, the CaChiIII2, CaChiIII7, CaChiVI1 and CaChiVI2 were upregulated by abiotic stress, while CaChiI1, CaChiIII7, CaChiIV1 and CaChiIV2 responded to hormonal treatments. Furthermore, CaChiIV1-silenced plants display weakened defense by reducing (60%) root activity and increase susceptibility to NaCl stress. Gene ontology (GO) enrichment analysis revealed that CaChi genes primarily contribute in response to biotic, abiotic stresses and metabolic/catabolic process within the biological process category. These results exposed that CaChi genes are involved in defense response and signal transduction, suggesting their vital roles in growth regulation as well as response to stresses in pepper plant. In conclusion, these finding provide basic insights for functional validation of the CaChi genes in different biotic and abiotic stresses.</div>
</front>
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<DateCompleted><Year>2018</Year>
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<ArticleTitle>Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications.</ArticleTitle>
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<Abstract><AbstractText>Chitin-binding proteins are pathogenesis-related gene family, which play a key role in the defense response of plants. However, thus far, little is known about the chitin-binding family genes in pepper (<i>Capsicum annuum</i>
 L.). In current study, 16 putative chitin genes (CaChi) were retrieved from the latest pepper genome database, and were classified into four distinct classes (I, III, IV and VI) based on their sequence structure and domain architectures. Furthermore, the structure of gene, genome location, gene duplication and phylogenetic relationship were examined to clarify a comprehensive background of the CaChi genes in pepper. The tissue-specific expression analysis of the CaChi showed the highest transcript levels in seed followed by stem, flower, leaf and root, whereas the lowest transcript levels were noted in red-fruit. Phytophthora capsici post inoculation, most of the CaChi (CaChiI3, CaChiIII1, CaChiIII2, CaChiIII4, CaChiIII6, CaChiIII7, CaChiIV1, CaChiVI1 and CaChiVI2) were induced by both strains (PC and HX-9). Under abiotic and exogenous hormonal treatments, the CaChiIII2, CaChiIII7, CaChiVI1 and CaChiVI2 were upregulated by abiotic stress, while CaChiI1, CaChiIII7, CaChiIV1 and CaChiIV2 responded to hormonal treatments. Furthermore, CaChiIV1-silenced plants display weakened defense by reducing (60%) root activity and increase susceptibility to NaCl stress. Gene ontology (GO) enrichment analysis revealed that CaChi genes primarily contribute in response to biotic, abiotic stresses and metabolic/catabolic process within the biological process category. These results exposed that CaChi genes are involved in defense response and signal transduction, suggesting their vital roles in growth regulation as well as response to stresses in pepper plant. In conclusion, these finding provide basic insights for functional validation of the CaChi genes in different biotic and abiotic stresses.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ali</LastName>
<ForeName>Muhammad</ForeName>
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	Serveur d'exploration Phytophthora
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Serveur d'exploration Phytophthora

Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications.

Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications.

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